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gustaveroussy / EaCoN

Easy Copy Number !
MIT License
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OncoScan.na33.r2 not found #19

Closed Aashilbatavia closed 4 years ago

Aashilbatavia commented 4 years ago

Hi I have previously run this tool and it has worked great, however, recently i received some data back and tried to apply this tool again and recieved the following error: "Error in apt.oncoscan.process(ATChannelCel = ATChannelCel, GCChannelCel = GCChannelCel, : Package OncoScan.na33.r2 not found !"

I was trying to find where this error was coming from but am baffled.

I was hoping you would be able to help

Thanks!

(i have OncoScanCNV.na33.r2_0.1.0.tar.gz and apt.oncoscan.2.4.0 installed, which work for most of the data i have, i do not have OncoScan.na33.r2 which i guess i need?)

l0ka commented 4 years ago

Hi, I had exactly the same problem as @Aashilbatavia.

Just put apt.build = "na33.r4" in the OS.Process() function.

aoumess commented 4 years ago

Thanks @l0ka for the right answer ! Effectively, that's becase Agilent did not give the same name to its annotation release versions for OncoScan and OncoScanCNV releases. It's r4 for the (older) OncoScan design, and r2 for the (more recent) OncoScanCNV one. Cheers