Merging the winsfix branch to master (patch tested)
. As of R3.2, the runmed() function now has new options to handle NA values. Unfortunately, the copynumber::winsorize() dependence EaCoN uses relies upon the runmed() function, but wasn't updated to comply to this new parameter. So I built a quick fix by forcing winsorize() to compute on the non-NA part of L2R values.
Merging the winsfix branch to master (patch tested) . As of R3.2, the runmed() function now has new options to handle NA values. Unfortunately, the copynumber::winsorize() dependence EaCoN uses relies upon the runmed() function, but wasn't updated to comply to this new parameter. So I built a quick fix by forcing winsorize() to compute on the non-NA part of L2R values.