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Error generating the L2R files on SNP 6.0 arrays #25

Open aliciapliego opened 2 years ago

aliciapliego commented 2 years ago

Hello, when running the command on the SNP6.0 arrays: SNP6.Process(CEL= "file.CEL", samplename = 'Sample_name, genome.pkg = "BSgenome.Hsapiens.UCSC.hg19")

I got the following error Error: Assigned data unlist(cs$chrom2chr[ao.df$chr]) must be compatible with existing data. x Existing data has 1813358 rows. x Assigned data has 357939 rows.

Any ideas why this is happening? Thanks in advance

aoumess commented 2 years ago

Hi ! Which version of EaCoN are-you using ? I tried to replicate your error with a public profile (GSM2538783 from GSE96708), but it worked well with the latest version (0.3.6-2) Could you provide me a CEL file for which the error arised, please ? Feel free to send it to bastien.job@gmail.com. Thanks !

aliciapliego commented 2 years ago

Hi! Many thanks for your fast answer. I was using the old version 0.3.6-1. I tried uploading to the new version and now works great. I have an additional question; is it applicable to Affymetrix Mapping 250k or 50k?

Thank you!

De: Bastien Job @.> Enviado: lunes, 6 de diciembre de 2021 16:19 Para: gustaveroussy/EaCoN @.> Cc: aliciapliego @.>; Author @.> Asunto: Re: [gustaveroussy/EaCoN] Error generating the L2R files on SNP 6.0 arrays (Issue #25)

Hi ! Which version of EaCoN are-you using ? I tried to replicate your error with a public profile (GSM2538783 from GSE96708), but it worked well with the latest version (0.3.6-2) Could you provide me a CEL file for which the error arised, please ? Feel free to send it to @.**@.>. Thanks !

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