Open lguerard opened 4 weeks ago
Thanks @lguerard for detailing the issue. How much RAM and how many CPU cores do you have?
I updated the post with the RAM amount.
As for the CPU, we're actually having a virtualized environment that shares resources between different VM. But each VM should have somewhere between 48 and 64 cores.
Alright, thanks for the details. I'm still experimenting with the dask Client, so I'll try to improve it over time to have a stable release in sopa 2.0.0
Description
When running the Cellpose segmentation using the
dask
backend, cell crashes after a while.Multiple workers showed the error
exceeded 95% memory budget. Restarting...". Then after a while it says that a task will be
marked as failed because 4 workers died while trying to run it`.Then it completely crashes with these errors :
Expected behavior
Cellpose patches created and processed
System