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gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells
https://gustaveroussy.github.io/sopa/
BSD 3-Clause "New" or "Revised" License
129 stars 15 forks source link

CosMX stitching images #5

Closed quentinblampey closed 6 months ago

quentinblampey commented 11 months ago

CosMX images (and transcripts) have to be stitched before running sopa

EDIT: people from spatialdata are working on this

quentinblampey commented 6 months ago

The reader was added in Sopa 1.0.10