WSI tile gathering optimizations

gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

https://gustaveroussy.github.io/sopa/

BSD 3-Clause "New" or "Revised" License

94 stars 8 forks source link

WSI tile gathering optimizations #71

Closed stergioc closed 1 month ago

stergioc commented 1 month ago

This PR improves the performance of tile gathering from the WSIs to about ~x7. Simplifies the codebase of sopa.patches.infer