gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
https://gustaveroussy.github.io/sopa/
BSD 3-Clause "New" or "Revised" License
94 stars 8 forks source link

comseg_patch update and api_tuto" #74

Closed tdefa closed 4 weeks ago

tdefa commented 4 weeks ago

-few modifications in the function sopa.segmentation.methods.comseg_patch() -writing of SOPA with ComSeg "API tutorial notebook"

Requieres the 0.2 comseg version to be run pip install comseg==0.2