Test current CDK code with newgs test server

[madisonkeene]

To ensure S3/dropbox etc parts already work

[madisonkeene]

Hitting an issue re: configuration URLs when talking to genomespace.org - need to email Broad about this

Exception in thread "main" org.genomespace.client.exceptions.ConfigurationError: There was a problem accessing the configuration properties at org.genomespace.client.ConfigurationUrls.init(ConfigurationUrls.java:111) at CDKExample.main(CDKExample.java:14) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.intellij.rt.execution.application.AppMain.main(AppMain.java:144) Caused by: javax.ws.rs.ProcessingException: javax.ws.rs.core.Response$Status$Family.familyOf(I)Ljavax/ws/rs/core/Response$Status$Family; at org.glassfish.jersey.client.ClientRuntime.invoke(ClientRuntime.java:236) at org.glassfish.jersey.client.JerseyInvocation$2.call(JerseyInvocation.java:671) at org.glassfish.jersey.internal.Errors.process(Errors.java:315) at org.glassfish.jersey.internal.Errors.process(Errors.java:297) at org.glassfish.jersey.internal.Errors.process(Errors.java:228) at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:422) at org.glassfish.jersey.client.JerseyInvocation.invoke(JerseyInvocation.java:667) at org.glassfish.jersey.client.JerseyInvocation$Builder.method(JerseyInvocation.java:396) at org.glassfish.jersey.client.JerseyInvocation$Builder.get(JerseyInvocation.java:296) at org.genomespace.client.ConfigurationUrls.remotePropertiesFile(ConfigurationUrls.java:170) at org.genomespace.client.ConfigurationUrls.init(ConfigurationUrls.java:107) ... 6 more Caused by: java.lang.NoSuchMethodError: javax.ws.rs.core.Response$Status$Family.familyOf(I)Ljavax/ws/rs/core/Response$Status$Family; at org.glassfish.jersey.message.internal.Statuses$StatusImpl.(Statuses.java:63) at org.glassfish.jersey.message.internal.Statuses$StatusImpl.(Statuses.java:54) at org.glassfish.jersey.message.internal.Statuses.from(Statuses.java:93) at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:507) at org.glassfish.jersey.client.ClientRuntime.invoke(ClientRuntime.java:227) ... 16 more

[madisonkeene]

Above issue now solved - classpath issue. Build with ant then run with java -cp "classes:lib/*" CDKExample

[madisonkeene]

Things to test:

General (data-type independent) tests:

• [x] Get username (Session.getCachedUsernameForSSO();).
• [ ] List Home directory.

Data types to test:

• [x] Swift.
• [x] S3.
• [x] Dropbox.
• [ ] Google Drive.

For each data type, test the following:

• [ ] List container.
• [ ] List subdirectory.
• [ ] Get metadata for directory (dmc.getMetadata(dirPath);).
• [ ] Get metadata for file (dmc.getMetadata(dirPath);).
• [ ] Make directory (dmc.createDirectory(baseDirPath, dirName);).
• [ ] Upload small file (dmc.uploadFile(file, dir, name, notify);).
• [ ] Upload large file (dmc.uploadFile(file, dir, name, notify);).
• [ ] Delete file (delete(dmc, dmc.getMetadata(path));).
• [ ] Download file (dmc.downloadFile(fileInfo, file, overwrite);).
• [ ] Get ACLs (fileMetadata.getEffectiveAcl().getAccessControlEntries();).
• [ ] Get READ permission status on ACL (Permission.READ.equals(acle.getPermission())).
• [ ] Get READ permission status on ACL (Permission.WRITE.equals(acle.getPermission())).

[madisonkeene]

I wrote a (okay-ish) test script that lives here: https://github.com/madiflannery/genomespace_cdk_test