gvlproject / gvl.ansible.playbook

Playbook for building the Genomics Virtual Laboratory
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Errors with 'supervisor' package #63

Open madisonkeene opened 7 years ago

madisonkeene commented 7 years ago

from @tseemann

Any ideas?

All I did was try to install a text editor pkg.

sudo apt-get install joe
<snip>
Unpacking joe (3.7-2.3ubuntu1) ...
Processing triggers for man-db (2.6.7.1-1ubuntu1) ...
Setting up supervisor (3.0b2-1) ...
Starting supervisor: invoke-rc.d: initscript supervisor, action "start" failed.
dpkg: error processing package supervisor (--configure):
 subprocess installed post-installation script returned error exit status 1
Setting up joe (3.7-2.3ubuntu1) ...
update-alternatives: using /usr/bin/joe to provide /usr/bin/editor (editor) in auto mode
Errors were encountered while processing:
 supervisor
E: Sub-process /usr/bin/dpkg returned an error code (1)

@dnbenso suggests apt-get remove supervisord as galaxy and smrt are running their own copy.

I did... just checking on the server that I resolved it on.   You can remove the supervisor process that cloudman is running.  I don't think that is what I did.  I think I actually removed the supervisor package.  apt-get remove supervisor.  And reinstalled it.

[12:26]  
ps -elf | grep super
1 S root      4189     1  0  80   0 - 16309 -      Aug05 ?        00:43:59 /home/ubuntu/.virtualenvs/CM/bin/python /home/ubuntu/.virtualenvs/CM/bin/supervisord -c /etc/supervisord.conf
nuwang commented 7 years ago

I thought this was fixed in 4.1?

madisonkeene commented 7 years ago

I thought I'd seen it before too but I couldn't find it in the closed issues when I had a quick look. It's an issue @tseemann reported a while ago though so definitely could have been fixed.