Update snippy tool to 3.1

gvlproject / gvl.ansible.playbook

Playbook for building the Genomics Virtual Laboratory

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Open Slugger70 opened 7 years ago

Slugger70 commented 7 years ago

Update Torsten's snippy tool in Galaxy to 3.1. New version of bioconda package has been produced. New galaxy tool is being tested.

Slugger70 commented 7 years ago

There are some problems with the bioconda dependencies for snippy.. Freebayes-parallel is having some issues, it has been referred to the IUC..

Slugger70 commented 7 years ago

Hopefully the issues have been fixed for the bioconda install of snippy. Currently testing it.

Slugger70 commented 7 years ago

Have an issue with the way snippy stores data for each run. Need to figure out a better way of pickling the runs.