error when using kallisto on ABRPI

gvlproject / microgvl.ansible.filesystem

The ansible playbook for the microbial gvl filesystem.

MIT License

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error when using kallisto on ABRPI #58

Open AnnaSyme opened 7 years ago

AnnaSyme commented 7 years ago

running: kallisto quant -i transcripts.idx -o output833 --single -l 500 -s 50 SRR833_sub.fastq.gz

error: ... [quant] finding pseudoalignments for the reads ...terminate called after throwing an instance of 'std::system_error' what(): Enable multithreading to use std::thread: Operation not permitted Aborted (core dumped)

Found a ?similar issue on the kallisto page: https://github.com/pachterlab/kallisto/issues/82

Thanks.

tseemann commented 7 years ago

Currently attempting to build from source: brew reinstall kallisto -s

But it fails due to #60

Maybe #59 would help.