Closed cdcapano closed 2 years ago
Very cool!
It might be good to add link from the pycbc inference docs and on this page as well when you get the chance.
@cdcapano Woops, I think there is a problem. I just tried the google colab tutorial and it runs into an error.
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
[<ipython-input-24-0f212eef32fc>](https://localhost:8080/#) in <module>()
2 from pycbc.inference.sampler import load_from_config as load_sampler_from_config
3
----> 4 sampler = load_sampler_from_config(cp, model, output_file='poisson.hdf')
5 sampler.run()
6 sampler.finalize()
[/usr/local/lib/python3.7/dist-packages/pycbc/inference/sampler/__init__.py](https://localhost:8080/#) in load_from_config(cp, model, **kwargs)
83 """
84 name = cp.get('sampler', 'name')
---> 85 return samplers[name].from_config(cp, model, **kwargs)
KeyError: 'epsie'
Did this run for you on google colab? Did you have a different epsie version perhaps?
@cdcapano The issue is that you require emcee to be installed for epsie to run and in particular you require emcee < 3.0. The latter is going to be an issue longer term. For the tutorial, you'll need to add emcee to the install list, but can we remove this link between epsie and emcee?
ModuleNotFoundError Traceback (most recent call last)
[<ipython-input-17-94b8b7f5336e>](https://localhost:8080/#) in <module>()
----> 1 from pycbc.inference.sampler.epsie import *
[/usr/local/lib/python3.7/dist-packages/pycbc/inference/sampler/epsie.py](https://localhost:8080/#) in <module>()
24
25 # we'll use emcee_pt's default beta ladder for temperature levels
---> 26 from emcee.ptsampler import default_beta_ladder
27
28 from pycbc.pool import choose_pool
ModuleNotFoundError: No module named 'emcee'
@ahnitz Whoops, sorry. I had only tested on my laptop, not on Google colab. I've added the install; will fill out another PR. Yeah, that connection needs to be broken. It was just to get the function that constructs the default temperature ladder code that's in ptemcee. I wasn't sure if just copying would break the ptemcee license, so I added an import instead, but given the dead state of ptemcee, best to move away from this.
Adds a tutorial explaining how to add custom models for inference