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gwastro / pycbc-inference-paper

Data Release associated with the PyCBC Inference paper. This includes posterior samples for GW150914, LVT151012, and GW151226 along with configuration files and run scripts,
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RuntimeError: Can't find MKL libraries #3

Open WuShichao opened 5 years ago

WuShichao commented 5 years ago

Hello, I use the docker version, but get this error, no MKL.

(pycbc-software) [pycbc@24f913201669 GW151226]$ ls extract_independent_samples.sh gw151226_inference.ini run_pycbc_inference_gw151226.sh (pycbc-software) [pycbc@24f913201669 GW151226]$ pwd /home/pycbc/pycbc-inference-paper/run_files/GW151226 (pycbc-software) [pycbc@24f913201669 GW151226]$ bash run_pycbc_inference_gw151226.sh 1135136340 1135136356 1135136238 1135137262 /home/pycbc/pycbc-software/lib/python2.7/site-packages/h5py/init.py:36: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type. from ._conv import register_converters as _register_converters 2019-06-03 16:42:42,073 Using seed 12 Traceback (most recent call last): File "/home/pycbc/pycbc-software/bin/pycbc_inference", line 4, in import('pkg_resources').run_script('PyCBC==1.12.3', 'pycbc_inference') File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/pkg_resources/init.py", line 654, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/pkg_resources/init.py", line 1434, in run_script exec(code, namespace, namespace) File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/EGG-INFO/scripts/pycbc_inference", line 195, in ctx = scheme.from_cli(opts) File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/pycbc/scheme.py", line 262, in from_cli ctx = MKLScheme() File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/pycbc/scheme.py", line 149, in init raise RuntimeError("Can't find MKL libraries") RuntimeError: Can't find MKL libraries (pycbc-software) [pycbc@24f913201669 GW151226]$

soumide1102 commented 5 years ago

Hi, This says you don't have MKL libraries set up in your environment. Changing PROCESSING_SCHEME=mkl to PROCESSING_SCHEME=cpu in the run_pycbc_inference_gw151226.sh script should be the fix.