When I try to use a Path from pathlib for inputs/outputs in a target I get the following error message:
File "/home/simond/miniconda3/lib/python3.9/site-packages/gwf/workflow.py", line 257, in target_from_template
new_target = Target(
File "<attrs generated init gwf.core.Target>", line 17, in __init__
File "/home/simond/miniconda3/lib/python3.9/site-packages/gwf/core.py", line 197, in _validate_path
_check_path(path)
File "/home/simond/miniconda3/lib/python3.9/site-packages/gwf/core.py", line 58, in _check_path
result = _has_nonprintable_char(path)
File "/home/simond/miniconda3/lib/python3.9/site-packages/gwf/core.py", line 39, in _has_nonprintable_char
chars = enumerate((unicodedata.category(char) == "Cc", char) for char in s)
TypeError: 'PosixPath' object is not iterable
The problem is that Path from pathlib do not support iteration as shown here:
>>> from pathlib import Path
>>> a = Path("/foo/bar")
>>> [c for c in a]
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
TypeError: 'PosixPath' object is not iterable
It would be really nice if GWF was to support pathlib
When I try to use a Path from pathlib for inputs/outputs in a target I get the following error message:
The problem is that Path from pathlib do not support iteration as shown here:
It would be really nice if GWF was to support pathlib
Thanks for a great tool 😃