python libraries version error while installing EnsembleTR

[Schahrjar]

Installation of EnsembleTR on Ubuntu returns multiple version errors. Some require newer versions of what I have, and some require older versions. For example scikit aks for python3.9 (I have python3.8) while EnsembleTR calls old versions of numpy.

Seems that the tool requires a specific assembly of dependencies. Is this possible to have a precompiled version of EnsembleTR?

Many thanks!

[heliziii]

Hi Shahriyar,

I apologize for the late reply. I have been working on solving the issue with package incompatibility. Can you please try and see if the following will install ensembletr:

pip install --upgrade pip
pip install ensembletr

you can then test it by

ensembletr --vcfs hipstr.vcf,gangstr.vcf --out ensemble.vcf --ref ref.fa

Best, Helia

[Schahrjar]

Great! Thanks Helia.

I installed via pip and then ran the ensembletr --help command, printed the help message.

Kind, Shahryar

[heliziii]

Great!