gymreklab / GangSTR

A tool for profiling long STRs from short reads
GNU General Public License v2.0
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chr_make_reference.sh: line 11: =X: command not found #123

Open kimi-du-bio opened 1 year ago

kimi-du-bio commented 1 year ago

Dear all, Thank you for providing this excellent software! When I use the 1_run_TRF.sh script to create a custom reference panel, I meet the error below: chr_make_reference.sh: line 11: =X: command not found

I think this because of an additional "$" character in line 11 of chr_make_reference.sh, and the following may be right? NONNUM=${NONNUMCHR//,/ }

Best wishes