search

gymreklab / GangSTR

A tool for profiling long STRs from short reads
GNU General Public License v2.0
85 stars 16 forks source link

WARNING: Region exceeds maximum total processed reads per sample. #77

Closed shenweima closed 5 years ago

shenweima commented 5 years ago

A message "WARNING: Region exceeds maximum total processed reads per sample." What is means?

nmmsv commented 5 years ago

Some regions of the genome accumulate many reads during the alignment process. This can slow down the genome-wide run significantly. As a result, we limit the number of reads processed per locus to avoid potentially problematic loci. You can increase this limit by using --max-proc-read <int> option.