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gymreklab / GangSTR

A tool for profiling long STRs from short reads
GNU General Public License v2.0
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STR info example #78

Closed Phillip-a-richmond closed 5 years ago

Phillip-a-richmond commented 5 years ago

Do you have an example of an STR info file? Do the loci have to be an exact match? Do you want bed (0-based) or the 1-based coordinate scheme?

Thanks, Phil

nmmsv commented 5 years ago

Hi Phil, The str-info file uses the same coordinates as the original regions file (1-based) and the loci have to be exact match. The

file is tab delimited and has a header similar to this: https://github.com/gymreklab/GangSTR#--str-info

test.txt

Please let me know if you had any other issues! :)