Crashing something about size

gymreklab / GangSTR

A tool for profiling long STRs from short reads

GNU General Public License v2.0

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Crashing something about size #93

Closed sequinstandards closed 3 years ago

sequinstandards commented 4 years ago

docker run -v $PWD:/data -i -t gymreklab/str-toolkit GangSTR --bam /data/A.bam --regions /data/hg38_ver13.bed --ref /data/chr21.fa  --out /data/GangSTR_PA_000000019 

[GangSTR-2.4] ProgressMeter: Loading read group id g1 for sample s1
terminate called after throwing an instance of 'std::out_of_range'
  what():  vector::_M_range_check: __n (which is 0) >= this->size() (which is 0)

nmmsv commented 4 years ago

Hello, Is it possible to try the latest release (2.4.5) to see if the problem is solved? That version is not on docker yet, but I can work on adding it if that's the only way you are able to run GangSTR. Best, Nima