Closed mlamkin7 closed 4 years ago
Below was the command ran which encountered what seemed to be an infinite loop. However, it finished to completion when the readlength was 250.
/storage/mlamkin/projects/tulip/src/tulip simreads -t wce --model params/GM12878_CTCF_ENCFF124LLI_ENCFF256QBB-1.9.json -f /storage/resources/dbase/human/hg19/hg19.fa -o fastqs/readlen500_wce --scale-outliers -c 7 --numcopies 1000 --numreads 10000 --readlen 500 --region chr22:1-51304566
GM12878_CTCF_ENCFF124LLI_ENCFF256QBB-1.9.json
{ "frag": { "k": 21, "theta": 9.5 }, "pcr_rate": 0.80, "pulldown": { "f": 0.0003432990051805973, "s": 0.3999766409397125 } }
Below was the command ran which encountered what seemed to be an infinite loop. However, it finished to completion when the readlength was 250.
/storage/mlamkin/projects/tulip/src/tulip simreads -t wce --model params/GM12878_CTCF_ENCFF124LLI_ENCFF256QBB-1.9.json -f /storage/resources/dbase/human/hg19/hg19.fa -o fastqs/readlen500_wce --scale-outliers -c 7 --numcopies 1000 --numreads 10000 --readlen 500 --region chr22:1-51304566
GM12878_CTCF_ENCFF124LLI_ENCFF256QBB-1.9.json