Discrete GSEA issues

[bgyori]

When using https://discovery.indra.bio/gene/discrete

• Often get timeout (504 error) with the default gene list, if including INDRA path-based analysis
• The result lists cannot be downloaded in any form
• There is no way to click through to see the statements behind INDRA upstream/downstream entities - this could be added by linking to subnetwork curation

[kkaris]

Often get timeout (504 error) with the default gene list, if including INDRA path-based analysis

Quick workaround: Set minimum evidence needed to 2 or higher and the analysis should finish within the 60 s timeout. Setting the belief cutoff at 0.6 seems to work as well.

The result lists cannot be downloaded in any form

This can be turned on by setting INDRA_COGEX_WEB_LOCAL=TRUE in the environment. See https://github.com/gyorilab/indra_cogex/blob/main/src/indra_cogex/apps/constants.py#L47-L50 There is one caveat: rather than forwarding the user to the results for viewing them and downloading them, they are only downloaded and the user is kept on the form page.