This PR mainly adds a notebook which contains a demonstration of some high-level model traversal functions that are useful to showcase what makes BioPAX special (and in turn, why using PyBioPAX is good, since it's relatively straightforwards to write functions like these compared to alternative BioPAX software tools).
This PR mainly adds a notebook which contains a demonstration of some high-level model traversal functions that are useful to showcase what makes BioPAX special (and in turn, why using PyBioPAX is good, since it's relatively straightforwards to write functions like these compared to alternative BioPAX software tools).
The main demo notebook can be seen here https://github.com/indralab/pybiopax/blob/add-demos/notebooks/Explore%20Pathway%20Commons.ipynb (until the branch is merged and deleted)
Side changes