search

h3abionet / TADA

TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
MIT License
19 stars 14 forks source link

Fails with single sample runs #1

Closed cjfields closed 4 years ago

cjfields commented 4 years ago

The workflow fails on single sample runs, likely due to R fussiness when using apply functions (note there are several steps where lapply or sapply is used to merge data from multiple samples). This caused Travis tests to fail.

cjfields commented 4 years ago

Travis-CI seems to be passing now when using two (downsampled) samples, note the change:

https://github.com/h3abionet/16S-rDNA-dada2-pipeline/commit/133192b57e87e02d6b3d466f5cbd6175ca64dbd3

I can replicate the failure using a single sample on our local instance, will attempt to debug this.

cjfields commented 4 years ago

See #11 for further details, work will continue on that ticket.