h3abionet / afpo

AfPO: African Population Ontology
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Population group and country of origin inconsistency #25

Closed anitacaron closed 8 months ago

anitacaron commented 9 months ago

As discussed in our last meeting, here's the list of inconsistencies in population_group and country of origin. For example, in Zambia, three populations (Bantu Central, British diaspora and Pygmy Central) define it as a country of origin, but they are not in Zambia as a population group. The difference we saw in direct subclass and subclasses is that all subclasses of these three classes infer to have Zambia as the country of origin.

Screenshot 2024-02-12 at 18 22 07
population population_label country country_label
http://purl.obolibrary.org/obo/AfPO_0000356 Berber Northern http://dbpedia.org/resource/Algeria Algeria
http://purl.obolibrary.org/obo/AfPO_0000273 Bantu Central http://dbpedia.org/resource/Angola Angola
http://purl.obolibrary.org/obo/AfPO_0000281 Pygmy Central http://dbpedia.org/resource/Angola Angola
http://purl.obolibrary.org/obo/AfPO_0000326 Bantu Southern http://dbpedia.org/resource/Botswana Botswana
http://purl.obolibrary.org/obo/AfPO_0000332 San http://dbpedia.org/resource/Botswana Botswana
http://purl.obolibrary.org/obo/AfPO_0000189 Berber Western http://dbpedia.org/resource/Burkina_Faso Burkina Faso
http://purl.obolibrary.org/obo/AfPO_0000151 Gurma http://dbpedia.org/resource/Burkina_Faso Burkina Faso
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Burundi Burundi
http://purl.obolibrary.org/obo/AfPO_0000187 Pygmy Eastern http://dbpedia.org/resource/Burundi Burundi
http://purl.obolibrary.org/obo/AfPO_0000283 Baka_Cameroon http://dbpedia.org/resource/Cameroon Cameroon
http://purl.obolibrary.org/obo/AfPO_0000273 Bantu Central http://dbpedia.org/resource/Cameroon Cameroon
http://purl.obolibrary.org/obo/AfPO_0000278 Kanuri http://dbpedia.org/resource/Cameroon Cameroon
http://purl.obolibrary.org/obo/AfPO_0000058 Tiv http://dbpedia.org/resource/Cameroon Cameroon
http://purl.obolibrary.org/obo/AfPO_0000273 Bantu Central http://dbpedia.org/resource/Central_African_Republic Central African Republic
http://purl.obolibrary.org/obo/AfPO_0000265 Nilotic Central http://dbpedia.org/resource/Central_African_Republic Central African Republic
http://purl.obolibrary.org/obo/AfPO_0000264 Ubangi Central http://dbpedia.org/resource/Central_African_Republic Central African Republic
http://purl.obolibrary.org/obo/AfPO_0000265 Nilotic Central http://dbpedia.org/resource/Chad Chad
http://purl.obolibrary.org/obo/AfPO_0000186 Semite Central http://dbpedia.org/resource/Chad Chad
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Comoros Comoros
http://purl.obolibrary.org/obo/AfPO_0000203 Akan http://dbpedia.org/resource/Ivory_Coast Côte d'Ivoire
http://purl.obolibrary.org/obo/AfPO_0000443 Kru http://dbpedia.org/resource/Ivory_Coast Côte d'Ivoire
http://purl.obolibrary.org/obo/AfPO_0000425 Mande Western http://dbpedia.org/resource/Ivory_Coast Côte d'Ivoire
http://purl.obolibrary.org/obo/AfPO_0000273 Bantu Central http://dbpedia.org/resource/Democratic_Republic_of_the_Congo Democratic Republic of the Congo
http://purl.obolibrary.org/obo/AfPO_0000207 Banyarwanda http://dbpedia.org/resource/Democratic_Republic_of_the_Congo Democratic Republic of the Congo
http://purl.obolibrary.org/obo/AfPO_0000265 Nilotic Central http://dbpedia.org/resource/Democratic_Republic_of_the_Congo Democratic Republic of the Congo
http://purl.obolibrary.org/obo/AfPO_0000281 Pygmy Central http://dbpedia.org/resource/Democratic_Republic_of_the_Congo Democratic Republic of the Congo
http://purl.obolibrary.org/obo/AfPO_0000264 Ubangi Central http://dbpedia.org/resource/Democratic_Republic_of_the_Congo Democratic Republic of the Congo
http://purl.obolibrary.org/obo/AfPO_0000356 Berber Northern http://dbpedia.org/resource/Egypt Egypt
http://purl.obolibrary.org/obo/AfPO_0000358 Nubian Northern http://dbpedia.org/resource/Egypt Egypt
http://purl.obolibrary.org/obo/AfPO_0000385 Beja http://dbpedia.org/resource/Eritrea Eritrea
http://purl.obolibrary.org/obo/AfPO_0000113 Oromo http://dbpedia.org/resource/Ethiopia Ethiopia
http://purl.obolibrary.org/obo/AfPO_0000273 Bantu Central http://dbpedia.org/resource/Gabon Gabon
http://purl.obolibrary.org/obo/AfPO_0000203 Akan http://dbpedia.org/resource/Ghana Ghana
http://purl.obolibrary.org/obo/AfPO_0000151 Gurma http://dbpedia.org/resource/Ghana Ghana
http://purl.obolibrary.org/obo/AfPO_0000425 Mande Western http://dbpedia.org/resource/Guinea Guinea
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Kenya Kenya
http://purl.obolibrary.org/obo/AfPO_0000327 British diaspora http://dbpedia.org/resource/Kenya Kenya
http://purl.obolibrary.org/obo/AfPO_0000199 Kalenjin http://dbpedia.org/resource/Kenya Kenya
http://purl.obolibrary.org/obo/AfPO_0000113 Oromo http://dbpedia.org/resource/Kenya Kenya
http://purl.obolibrary.org/obo/AfPO_0000326 Bantu Southern http://dbpedia.org/resource/Lesotho Lesotho
http://purl.obolibrary.org/obo/AfPO_0000443 Kru http://dbpedia.org/resource/Liberia Liberia
http://purl.obolibrary.org/obo/AfPO_0000425 Mande Western http://dbpedia.org/resource/Liberia Liberia
http://purl.obolibrary.org/obo/AfPO_0000356 Berber Northern http://dbpedia.org/resource/Libya Libya
http://purl.obolibrary.org/obo/AfPO_0000307 Toubou http://dbpedia.org/resource/Libya Libya
http://purl.obolibrary.org/obo/AfPO_0000370 Malagasy http://dbpedia.org/resource/Madagascar Madagascar
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Malawi Malawi
http://purl.obolibrary.org/obo/AfPO_0000270 Nilotic Western http://dbpedia.org/resource/Mali Mali
http://purl.obolibrary.org/obo/AfPO_0000201 Senufo http://dbpedia.org/resource/Mali Mali
http://purl.obolibrary.org/obo/AfPO_0000356 Berber Northern http://dbpedia.org/resource/Mauretania Mauritania
http://purl.obolibrary.org/obo/AfPO_0000356 Berber Northern http://dbpedia.org/resource/Morocco Morocco
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Mozambique Mozambique
http://purl.obolibrary.org/obo/AfPO_0000326 Bantu Southern http://dbpedia.org/resource/Namibia Namibia
http://purl.obolibrary.org/obo/AfPO_0000331 Khoekhoe http://dbpedia.org/resource/Namibia Namibia
http://purl.obolibrary.org/obo/AfPO_0000200 Pygmy Southern http://dbpedia.org/resource/Namibia Namibia
http://purl.obolibrary.org/obo/AfPO_0000332 San http://dbpedia.org/resource/Namibia Namibia
http://purl.obolibrary.org/obo/AfPO_0000270 Nilotic Western http://dbpedia.org/resource/Niger Niger
http://purl.obolibrary.org/obo/AfPO_0000270 Nilotic Western http://dbpedia.org/resource/Nigeria Nigeria
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Rwanda Rwanda
http://purl.obolibrary.org/obo/AfPO_0000187 Pygmy Eastern http://dbpedia.org/resource/Rwanda Rwanda
http://purl.obolibrary.org/obo/AfPO_0000205 Jola http://dbpedia.org/resource/Senegal Senegal
http://purl.obolibrary.org/obo/AfPO_0000428 Wolof http://dbpedia.org/resource/Senegal Senegal
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Somalia Somalia
http://purl.obolibrary.org/obo/AfPO_0000326 Bantu Southern http://dbpedia.org/resource/South_Africa South Africa
http://purl.obolibrary.org/obo/AfPO_0000573 Birwa http://dbpedia.org/resource/South_Africa South Africa
http://purl.obolibrary.org/obo/AfPO_0000331 Khoekhoe http://dbpedia.org/resource/South_Africa South Africa
http://purl.obolibrary.org/obo/AfPO_0000332 San http://dbpedia.org/resource/South_Africa South Africa
http://purl.obolibrary.org/obo/AfPO_0000305 Baggara http://dbpedia.org/resource/Sudan Sudan
http://purl.obolibrary.org/obo/AfPO_0000385 Beja http://dbpedia.org/resource/Sudan Sudan
http://purl.obolibrary.org/obo/AfPO_0000190 Nubian Eastern http://dbpedia.org/resource/Sudan Sudan
http://purl.obolibrary.org/obo/AfPO_0000187 Pygmy Eastern http://dbpedia.org/resource/Sudan Sudan
http://purl.obolibrary.org/obo/AfPO_0000395 Sudanese Arab http://dbpedia.org/resource/Sudan Sudan
http://purl.obolibrary.org/obo/AfPO_0000290 Beti-Pahuin http://dbpedia.org/resource/São_Tomé_and_Príncipe São Tomé and Príncipe
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Tanzania Tanzania
http://purl.obolibrary.org/obo/AfPO_0000183 Khoisan Eastern http://dbpedia.org/resource/Tanzania Tanzania
http://purl.obolibrary.org/obo/AfPO_0000356 Berber Northern http://dbpedia.org/resource/Tunisia Tunisia
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Uganda Uganda
http://purl.obolibrary.org/obo/AfPO_0000199 Kalenjin http://dbpedia.org/resource/Uganda Uganda
http://purl.obolibrary.org/obo/AfPO_0000198 Luo http://dbpedia.org/resource/Uganda Uganda
http://purl.obolibrary.org/obo/AfPO_0000187 Pygmy Eastern http://dbpedia.org/resource/Uganda Uganda
http://purl.obolibrary.org/obo/AfPO_0000273 Bantu Central http://dbpedia.org/resource/Zambia Zambia
http://purl.obolibrary.org/obo/AfPO_0000327 British diaspora http://dbpedia.org/resource/Zambia Zambia
http://purl.obolibrary.org/obo/AfPO_0000281 Pygmy Central http://dbpedia.org/resource/Zambia Zambia
http://purl.obolibrary.org/obo/AfPO_0000369 Bantu Eastern http://dbpedia.org/resource/Zimbabwe Zimbabwe
http://purl.obolibrary.org/obo/AfPO_0000350 Ndebele http://dbpedia.org/resource/Zimbabwe Zimbabwe
http://purl.obolibrary.org/obo/AfPO_0000343 Sotho http://dbpedia.org/resource/Zimbabwe Zimbabwe
Melek-C commented 9 months ago

@anitacaron After discussing this issue with @abenkahla we found that in the previous version the terms belonging to "Rrelationship" annotation were modified as "subclass_of" and the "country_of_residence" was removed in the new version. Maybe something went wrong during the update or the data transfer from webprotégé to protégé. How we should process to fix this issue.

Melek-C commented 9 months ago

Reminder!

anitacaron commented 9 months ago

@Melek-C @abenkahla Sorry for the late reply on this. Do you still have the link to the ontology in the webprotege? Can I have access?

Melek-C commented 9 months ago

Hi @anitacaron @abenkahla just shared with you the access to the webprotege AfPO.

anitacaron commented 8 months ago

After meeting today, we decided: