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h3abionet / genesis2

Implementation of the Genesis 2 tool
MIT License
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Exception when changing PCA icon #2

Open shaze opened 2 years ago

shaze commented 2 years ago

I click on an individual, choose "group icon data", pick a group and press the "group icon button" and choose "change icon"

Exception in thread "JavaFX Application Thread" java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at javafx.fxml.FXMLLoader$MethodHandler.invoke(FXMLLoader.java:1787) at javafx.fxml.FXMLLoader$ControllerMethodEventHandler.handle(FXMLLoader.java:1670) at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49) at javafx.event.Event.fireEvent(Event.java:198) at javafx.scene.Node.fireEvent(Node.java:8879) at javafx.scene.control.Button.fire(Button.java:200) at com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(ButtonBehavior.java:206) at com.sun.javafx.scene.control.inputmap.InputMap.handle(InputMap.java:274) at com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218) at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:80) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49) at javafx.event.Event.fireEvent(Event.java:198) at javafx.scene.Scene$MouseHandler.process(Scene.java:3851) at javafx.scene.Scene$MouseHandler.access$1200(Scene.java:3579) at javafx.scene.Scene.processMouseEvent(Scene.java:1849) at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2588) at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:397) at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295) at java.base/java.security.AccessController.doPrivileged(Native Method) at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:434) at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:390) at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:433) at com.sun.glass.ui.View.handleMouseEvent(View.java:556) at com.sun.glass.ui.View.notifyMouse(View.java:942) at com.sun.glass.ui.mac.MacView.notifyMouse(MacView.java:127) at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoopImpl(Native Method) at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoop(MacApplication.java:109) at com.sun.glass.ui.Application.enterNestedEventLoop(Application.java:509) at com.sun.glass.ui.EventLoop.enter(EventLoop.java:107) at com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(QuantumToolkit.java:591) at javafx.stage.Stage.showAndWait(Stage.java:465) at org.h3abionet.genesis.model.PCAGraph.showIndividualDetails(PCAGraph.java:806) at org.h3abionet.genesis.model.PCAGraph.lambda$setSubjectMouseEvent$0(PCAGraph.java:448) at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49) at javafx.event.Event.fireEvent(Event.java:198) at javafx.scene.Scene$ClickGenerator.postProcess(Scene.java:3564) at javafx.scene.Scene$ClickGenerator.access$8200(Scene.java:3492) at javafx.scene.Scene$MouseHandler.process(Scene.java:3860) at javafx.scene.Scene$MouseHandler.access$1200(Scene.java:3579) at javafx.scene.Scene.processMouseEvent(Scene.java:1849) at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2588) at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:397) at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295) at java.base/java.security.AccessController.doPrivileged(Native Method) at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:434) at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:390) at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:433) at com.sun.glass.ui.View.handleMouseEvent(View.java:556) at com.sun.glass.ui.View.notifyMouse(View.java:942) at com.sun.glass.ui.mac.MacView.notifyMouse(MacView.java:127) at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoopImpl(Native Method) at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoop(MacApplication.java:109) at com.sun.glass.ui.Application.enterNestedEventLoop(Application.java:509) at com.sun.glass.ui.EventLoop.enter(EventLoop.java:107) at com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(QuantumToolkit.java:591) at javafx.stage.Stage.showAndWait(Stage.java:465) at org.h3abionet.genesis.model.PCAGraph.showIndividualDetails(PCAGraph.java:806) at org.h3abionet.genesis.model.PCAGraph.lambda$setSubjectMouseEvent$0(PCAGraph.java:448) at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238) at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191) at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56) at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114) at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74) at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:54) at javafx.event.Event.fireEvent(Event.java:198) at javafx.scene.Scene$ClickGenerator.postProcess(Scene.java:3564) at javafx.scene.Scene$ClickGenerator.access$8200(Scene.java:3492) at javafx.scene.Scene$MouseHandler.process(Scene.java:3860) at javafx.scene.Scene$MouseHandler.access$1200(Scene.java:3579) at javafx.scene.Scene.processMouseEvent(Scene.java:1849) at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2588) at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:397) at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295) at java.base/java.security.AccessController.doPrivileged(Native Method) at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:434) at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:390) at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:433) at com.sun.glass.ui.View.handleMouseEvent(View.java:556) at com.sun.glass.ui.View.notifyMouse(View.java:942) at com.sun.glass.ui.mac.MacView.notifyMouse(MacView.java:127) Caused by: java.lang.reflect.InvocationTargetException at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.javafx.reflect.Trampoline.invoke(MethodUtil.java:76) at jdk.internal.reflect.GeneratedMethodAccessor29.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.javafx.reflect.MethodUtil.invoke(MethodUtil.java:273) at com.sun.javafx.fxml.MethodHelper.invoke(MethodHelper.java:83) at javafx.fxml.FXMLLoader$MethodHandler.invoke(FXMLLoader.java:1782) ... 125 more Caused by: java.lang.NullPointerException: The color components or name must be specified at javafx.scene.paint.Color.web(Color.java:394) at javafx.scene.paint.Color.web(Color.java:647) at org.h3abionet.genesis.controller.IconOptionsController.setIconColorValue(IconOptionsController.java:129) at org.h3abionet.genesis.controller.PCAIndividualDetailsController.changeIcon(PCAIndividualDetailsController.java:152) ... 136 more

shaze commented 2 years ago

The problem appears to be that sometimes when you click on the individual, there is a pop up with the PCA position but not the individuals' identification. This appears to happen when the PCA is in zoom mode.