Closed azzaea closed 7 years ago
Can you please explain what this change does?
Hello Peter, Yes, there were still some mistakes in the VQSR and Realignment steps:
tools/GATK-VariantRecalibrator-SNPs.cwl
, but it wasn't stated as dependency in the workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl
. It also needed fixing in the json files provided for testing (/workflows/GATK/GATK-complete-WES-Workflow-h3abionet.dockstore.json
, and /workflows/GATK/GATK-complete-WES-Workflow-h3abionet.json
)Thank you, Azza
Thanks. We really need to figure out how to test this.
…tage - Thank you Jennie Zermeno for pointing out