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h3abionet
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h3ameta
H3ABioNet Metagenomics Workflow
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Sorting out indentation
#44
grbot
closed
5 years ago
0
Sorting out indentation
#43
grbot
closed
5 years ago
0
Sorting out indentation
#42
grbot
closed
5 years ago
0
Sorting out indentation
#41
grbot
closed
5 years ago
0
Sorting out indentation python3 compatibility
#40
grbot
closed
5 years ago
0
Setup symlinks with /bin directory to where docker files are located
#39
grbot
closed
5 years ago
0
Pulling in master changes
#38
grbot
closed
5 years ago
0
Merge master into gerrit-dev
#37
grbot
closed
5 years ago
0
Now running with python 3.6
#36
grbot
closed
5 years ago
0
Add /bin scripts
#35
grbot
closed
5 years ago
0
short-read pipeline: fixed staging
#34
grbot
closed
5 years ago
0
Updating dev with master
#33
grbot
closed
5 years ago
0
Final report generate now uses Python 3.6
#32
grbot
closed
5 years ago
0
Added staging of input files and moved scripts to bin
#31
grbot
closed
5 years ago
0
Renaming long reads report docker and references
#30
grbot
closed
5 years ago
0
Updating gerrit-dev with master changes
#29
grbot
closed
5 years ago
0
Add some updates
#28
grbot
closed
5 years ago
0
Now writing to /tmp dir in container mount
#27
grbot
closed
5 years ago
0
Fix copy
#26
grbot
closed
5 years ago
0
Report generation docker def file for short reads
#25
grbot
closed
5 years ago
0
Adding pairfq dockerfile to join mismatching paired read set
#24
grbot
closed
5 years ago
0
Pull in PacBio additions and Mariem's code short-read code
#23
grbot
closed
5 years ago
0
Pull in Master code and those of Mariem
#22
grbot
closed
5 years ago
0
Krona db is within container, fixed typos, added additional info
#21
grbot
closed
5 years ago
0
Added some additional steps to workflow
#20
grbot
closed
5 years ago
0
Fixed missing syntax
#19
grbot
closed
5 years ago
0
Merge few fixes related to containers
#18
grbot
closed
5 years ago
0
Need to be fastq_file not fastq_file_in
#17
grbot
closed
5 years ago
0
Scott
#16
shaze
closed
5 years ago
0
Fixed another type
#15
grbot
closed
5 years ago
0
Fixed typo
#14
grbot
closed
5 years ago
0
Now reading from h3abionet github repos
#13
grbot
closed
5 years ago
0
Pull in gerrit-dev
#12
grbot
closed
5 years ago
0
Pulling in some container work
#11
grbot
closed
5 years ago
0
Made some small modifications to run on cream
#10
grbot
closed
5 years ago
1
Preprocessing: extra files in repository
#9
elimoss
opened
5 years ago
5
Update short read pipeline - viral detection
#8
AlfredUg
opened
5 years ago
1
Updating short read viral detection
#7
AlfredUg
closed
5 years ago
0
Pulling in separate work
#6
grbot
closed
5 years ago
0
straincomp dataset
#5
mushalallam
closed
5 years ago
4
Example Issue
#4
elimoss
opened
5 years ago
4
Dev
#3
mushalallam
opened
5 years ago
0
Incorporating bwa in main workflow
#2
AlfredUg
closed
5 years ago
0
Change comment notation # to nextflow standard //
#1
kviljoen
closed
5 years ago
1