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hMRI-group
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hMRI-toolbox
A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
GNU General Public License v2.0
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Add mppca denoising- input also phase img and denoise complex volumes
#109
Barisevrenugur
opened
1 week ago
0
Use cell- instead of char- array to accommodate non-standard file names in RFsens
#108
Barisevrenugur
opened
3 weeks ago
0
Char incompatibility size
#107
franciscofritz
opened
1 month ago
16
Calculate B1map and MPM maps without SPM environment
#106
franciscofritz
opened
1 month ago
4
Read EffectiveEchoTime in new TerraX Dicom format
#105
Barisevrenugur
closed
1 month ago
0
Add mppca-denoising to denoising module
#104
Barisevrenugur
opened
1 month ago
0
Read EffectiveEchoTime in new TerraX Dicom format
#103
Barisevrenugur
closed
1 month ago
0
Error when reading JSON file
#102
NeuroimagingOL
closed
1 month ago
7
Save denoising supplementary files as nifti instead of .mat
#101
Barisevrenugur
opened
2 months ago
2
No B1+ bias correction applied to A maps (when PD white matter calibration is toggled off)?
#100
Alfiew
closed
4 months ago
5
Create docker-publish.yml
#99
Barisevrenugur
closed
4 months ago
0
Fix inconsistency between new implementation of PD and old T2* weighting removal method
#98
lukeje
opened
7 months ago
2
add denoising module to toolbox: Java-Matlab interface for LCPCA denoising
#97
Barisevrenugur
closed
6 months ago
3
Test&Merge: updated FIL seste seq parameters in get_metadata_val_classic (#8) #95
#96
Barisevrenugur
closed
7 months ago
1
updated FIL seste seq parameters in get_metadata_val_classic (#8)
#95
mfcallaghan
closed
8 months ago
0
Random image misalignment
#94
m13slash9
closed
5 months ago
2
Spatial processing fixes
#93
Barisevrenugur
closed
6 months ago
2
Fix error if optimization toolbox not present during NLLS R2* calculation
#92
Barisevrenugur
closed
6 months ago
0
Allow separate B1 map for MTsat B1 correction
#91
lukeje
opened
10 months ago
0
display warning message when contrasts have unmatching dimension
#90
Barisevrenugur
closed
11 months ago
1
standalone version error
#89
SusiStinkemuehle
closed
11 months ago
4
Requirement for optimization toolbox?
#88
adelphin
closed
6 months ago
13
PD calculation without OLS broken if `nr_echoes_forA` does not equal `nr_echoes4avg`
#87
lukeje
opened
1 year ago
8
Fix crash if contrasts have different matrix sizes
#86
lukeje
closed
11 months ago
4
Fix B1 map creation crash when no sidecar files present
#85
lukeje
closed
10 months ago
8
Fix deprecation of MATLAB datestr syntax in hMRI logging
#84
lukeje
closed
1 year ago
1
Fix RFsens file duplication bug hackathon
#83
Barisevrenugur
closed
10 months ago
0
Modify local config for compilation
#82
Barisevrenugur
closed
1 year ago
0
Issue with B1 bias correction with 3D EPI images
#81
julfou81
closed
1 year ago
2
Enforce number of B1 input images in batch interface
#80
lukeje
closed
9 months ago
0
Implement Guillaume’s fix for SPM development version compatibility
#79
Barisevrenugur
closed
1 year ago
0
Add new module to get user input and modify mt_prot
#78
Barisevrenugur
closed
1 year ago
2
Compilation and hmri_local_defaults.m
#77
Barisevrenugur
closed
1 year ago
2
Rename R2s parameter in hmri_defaults
#76
Barisevrenugur
opened
1 year ago
2
Copy acquisition metadata to extrapolated weighted images
#75
lukeje
closed
1 year ago
0
RFsens calculation fails if inputs have the same filename
#74
lukeje
closed
10 months ago
1
Set default WM value for PD calibration
#73
Barisevrenugur
closed
1 year ago
0
Thresholding qMRI_maps
#72
franciscofritz
closed
1 week ago
3
Fix floating point comparison when selecting imperfect spoiling correction protocol
#71
lukeje
closed
1 year ago
0
Fix version check for standalone SPM
#70
lukeje
closed
1 year ago
0
Separate MTsat, add different MTsat correction models
#69
lukeje
closed
11 months ago
14
Bugfix for creating NIfTI files from synthetic template files without a private field
#68
lukeje
closed
1 year ago
0
Include errormap generation
#67
milaurose
closed
1 year ago
0
Add warning if large angles are used with the "Small angle approx" option
#66
spam-depository
opened
1 year ago
0
Add GUI option to disable diffusion spoiling
#65
halirutan
opened
1 year ago
1
Imperfect RF spoiling correction: make diffusion optional
#64
mfcallaghan
opened
1 year ago
0
hMRI Toolbox error in MATLAB R2023a with the development version of SPM
#63
inhuszar
closed
1 year ago
8
Support repetition time stored in BIDS AFI B1-mapping sidecar file
#62
lukeje
closed
1 year ago
0
QUIQI updates
#61
nadegecorbin
closed
1 year ago
0
Map creation: retain qform in maps
#60
lukeje
closed
1 year ago
1
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