Open cogumbreiro opened 7 years ago
@DaoWen, I am happy to work on this issue if you are happy with it. Unfortunately I am not knowledgeable on the details of tuning --- as in, I can't explain what each tuning file is doing --- so I would need your help on improving that part of the documentation (see #14).
@cogumbreiro: It would be great if you can make any of the improvements here or in #14. Pull requests are welcome on the code in this repo. As for the wiki, unfortunately I don't think GitHub lets you do PRs for wiki updates, so this might be a good process to follow instead:
git clone https://github.com/habanero-rice/cnc-framework.wiki.git
.patch
file generated by your PR to apply your changes to the actual wikiCool. I will work on this issue then. Regarding #14 I will definitely need more input from your side.
It would be nice to bundle some sample data with the Smith-Waterman example. As it stands
run_test.sh
is breaking (see error message below).It seems to me that the
README
is mentioningxstack
andCnC-OCR
unnecessarily, as it works perfectly fine with iCnC for example.Finally, it would be nice to mention the tuning parameters again and possibly cross-reference the tuning section of the wiki.
Recommendations
run_test.sh
to use said sample inputXSTG_ROOT
orOCR
as the exemple is not specific to these platformsError log of
run_test.sh