Unsupervised clustering

hackseq / 2017_project_5

Developing advanced R tutorials for genomic data analysis

https://hackseq.github.io/2017_project_5/

MIT License

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Unsupervised clustering #6

Open acavalla opened 6 years ago

acavalla commented 6 years ago

Hi all,

I'll be working on producing a tutorial on the subject of unsupervised ML/clustering packages. The subtopics I have are as follows:

PCA (+ scree)
NMF
Hierarchical clustering
Consensus clustering
tSNE

I'll produce visualisations for each at the end of the section. If anyone has any recommendations for packages they've used that didn't have a vignette or comprehensive online tutorial, hit me up!

@hackseq/2017_team_5

zhenyisong commented 6 years ago

tSNE seems to solve problems in single cell experiments and infer lineage evolution. I wonder if someone else use the Manifold learning, nonlinear grouping approach.