hacone / AgIn

Process SMRT sequencing kinetic summary to predict regional methylation on large genome
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java version affected installation #7

Closed JohnUrban closed 7 years ago

JohnUrban commented 7 years ago

Hi,

This could be specific to my system, but I was unable to install when java 8u66 was in the environment. It worked when I switched to java 7u5.

Some of the errors I was seeing with 8u66 were:

:: retrieving :: org.scala-sbt#boot-scala
    confs: [default]
    4 artifacts copied, 0 already retrieved (19939kB/47ms)
error: error while loading CharSequence, class file '/gpfs/runtime/opt/java/8u66/jre/lib/rt.jar(java/lang/CharSequence.class)' is broken
(bad constant pool tag 18 at byte 10)
[error] Type error in expression
Project loading failed: (r)etry, (q)uit, (l)ast, or (i)gnore? r
error: error while loading CharSequence, class file '/gpfs/runtime/opt/java/8u66/jre/lib/rt.jar(java/lang/CharSequence.class)' is broken
(bad constant pool tag 18 at byte 10)
[error] Type error in expression
Project loading failed: (r)etry, (q)uit, (l)ast, or (i)gnore? i
[warn] Ignoring load failure: no project loaded.
[error] Not a valid command: package-dist
[error] package-dist

I thought I'd report it in case it is helpful to anyone. Otherwise, I think it is now installed for me.