Final assignment

[tehilayehudai]

Hi, In the important notes section, you wrote that any redirection to data outside the notebook would result in a lowering of the grade. but you also mentioned that we should include figures. Can we attach a folder with the results outputs images so they will appear inside the notebook?

[hadasvolk]

Yes What I meant is don't tell me look there and there. You can embed the figure in the notebook

[tehilayehudai]

Thanks! And two more questions.. 1. We wrote the bash commands with bash in the markdown cell and not with "!" , it is OK?

2. About the Python analysis - Do you want us to attach the CSV files on which the analysis is based? Or should we only attach figures like the volcano plot and clustermap?

[hadasvolk]

1. Ok
2. Attach the csv, but also add representative rows from the data frame in the notebook (head/topgenes...)

[JOSHKAHN96]

So if we write the bash commands in a markdown cells, does that mean we can just attach the kallisto output (.tsv) needed for the Python code in the file we send you?

[hadasvolk]

Attach the tsv, but also add representative rows from the data frame in the notebook (head/topgenes...)