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hadasvolk / CompLabNGS

Computational Lab in Next Generation Sequencing and Genomics Data Analysis - TAU 0411358701
MIT License
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Ex8 Q3 #6

Closed shovalsegal closed 4 months ago

shovalsegal commented 4 months ago

I think I did things right, but I can't find this genes on IGV (YDL083c YEL003W YKL180W YNL162W). I uploaded the reference genome file - S288C_reference_sequence_R64-2-1_20150113.fasta the annotation - S288C_reference_annotation_proc.gff and the indexed (by samtools) STAR BAM file - star_mapAligned.sortedByCoord.out.bam

Where I might be wrong?

hadasvolk commented 4 months ago

I'm not sure, sounds like you did right Can you upload an IGV screenshot for region ChrIV:304,926-309,789?

shovalsegal commented 4 months ago

ok, now its working, i can find the genes. ty