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haddocking / disvis

Visualisation of conformational space restriction by distance restraints
Apache License 2.0
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visualization #2

Closed ever4cyth closed 9 years ago

ever4cyth commented 9 years ago

Hi developer,

wonder how to generate figure 1 in your paper? Any script to do that? Thanks!

latrocinia commented 9 years ago

Hi, For the figure we used UCSF Chimera, no special script. After running disvis, we opened the fixed and scanning chain, together with the output accessible_interaction_space.mrc. This shows then the spaces that are consistent with at least N restraints, where N can be chosen by using the density slider in Chimera. Hope this helps! Gydo On Jun 8, 2015 5:43 AM, ever4cyth notifications@github.com wrote:Hi developer,

wonder how to generate figure 1 in your paper? Any script to do that? Thanks!

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amjjbonvin commented 9 years ago

May-be good to add this info to the repo

Dr. Alexandre M.J.J Bonvin Professor of Computational Structural Biology Faculty of Science, Utrecht University, the Netherlands Phone: +31-30-2533859 | Fax: +31-30-2537623 Email: a.m.j.j.bonvin@uu.nl

http://www.uu.nl/staff/amjjbonvin | http://bonvinlab.org

On 8 jun. 2015, at 09:12, Gydo van Zundert notifications@github.com wrote:

Hi, For the figure we used UCSF Chimera, no special script. After running disvis, we opened the fixed and scanning chain, together with the output accessible_interaction_space.mrc. This shows then the spaces that are consistent with at least N restraints, where N can be chosen by using the density slider in Chimera. Hope this helps! Gydo On Jun 8, 2015 5:43 AM, ever4cyth notifications@github.com wrote:Hi developer,

wonder how to generate figure 1 in your paper? Any script to do that? Thanks!

—Reply to this email directly or view it on GitHub. — Reply to this email directly or view it on GitHub.