Closed Liamlee97 closed 2 days ago
Thanks for reporting, @Liamlee97 could you please provide the full log?
Thanks for the log, we can already see some issues.
To help us diagnose further could you please show us the output of this one https://github.com/haddocking/haddock3/blob/main/examples/analysis/contmap-test.cfg ?
Thanks for the quick reply. Here's the output txt and log txt files. log.txt Contmap-test output.txt
Thanks again for these logs, weirdly none of us managed to replicate this error - our guess is that it has something to do with the jupyter configuration.
Could you try to run it outside this jupyter environment?
Thanks, I have been attempting to run haddock3 on local computer environment, but I seem to have issue with the very installation of haddock3 now... Using windows x64, VS code, miniconda. All VS build tools are in PATH, yet for some reason pip install . brings me error (see image below).
But ideally I would like to make haddock work in institution's jupyter environment for visibility purposes - is there no way of troubleshooting this at all?
Using windows x64, VS code, miniconda.
We do not support windows native, you could try running on via WSL tho
But ideally I would like to make haddock work in institution's jupyter environment for visibility purposes - is there no way of troubleshooting this at all?
Since we cannot replicate it's tricky to debug it - but could you try to install it from a fresh 3.12 environment? Also please send us the installation log generated by pip install -vvv haddock3
(it's going to be a very long one)
Thanks for your suggestions. Installing haddock3 from fresh with a new miniconda3 env with python 3.12 did the magic somehow! Functions are all working now. Many thanks again!
Awesome! Guess sometimes you just need to "turn it off and on again" 🤓
Hi, I have installed Haddock3 and CNS as per instructions provided by Haddock3 website. Running this via Jupyter connected to my institution's server.
When trying to run the code below with no modification to the .cfg code it gives me an error regarding NonType object with no attribute identificator. Would appreciate any help.
haddock3 docking-antibody-antigen-CDR-accessible-clt-test.cfg
The error is: