haddocking / pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.
https://haddocking.github.io/pdb-tools/
Apache License 2.0
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pdb_selb #163

Open amjjbonvin opened 4 months ago

amjjbonvin commented 4 months ago

Is your tool request related to a problem? Please describe.

With the AlphaFold models, it would be nice to have simple tool to filter on a residue basis based on the B-factor value. The user will have to know what is the scale (there are inverted scales used)

Describe the solution you'd like

pdb_selb should select residues larger or small than a user-defined B-factor value.

E.g.

pdb_selb -b >70 <mypdbfile>

or

pdb_selb -b <30 <mypdbfile>