I have a two part question. First, this is what my terminal reads when I launch docker.
mgitt@mgpc:~/workspace/omero/docker-omero$ sudo docker-compose up
[sudo] password for mgitt:
Starting omero-data ...
Starting omero-data ... done
Starting omero-db ...
Starting omero-db ... done
Starting omero-server ...
Starting omero-server ... done
Starting omero-web ...
Starting omero-web ... done
Attaching to omero-data, omero-db, omero-server, omero-web
omero-db | LOG: database system was interrupted; last known up at 2017-10-06 15:43:16 UTC
omero-data exited with code 0
omero-server | Waiting for database server to be up.
omero-web | 2017-10-10 13:20:03,557 CRIT Supervisor running as root (no user in config file)
omero-db | FATAL: the database system is starting up
omero-web | 2017-10-10 13:20:03,559 INFO supervisord started with pid 1
omero-db | LOG: database system was not properly shut down; automatic recovery in progress
omero-db | LOG: record with zero length at 0/208C630
omero-db | LOG: redo is not required
omero-db | LOG: MultiXact member wraparound protections are now enabled
omero-db | LOG: database system is ready to accept connections
omero-db | LOG: autovacuum launcher started
omero-web | 2017-10-10 13:20:04,561 INFO spawned: 'nginx' with pid 9
omero-web | 2017-10-10 13:20:04,563 INFO spawned: 'omero_web' with pid 10
omero-web | 2017-10-10 13:20:06,429 INFO success: nginx entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web | 2017-10-10 13:20:06,430 INFO success: omero_web entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web | 2017-10-10 13:20:07,328 INFO exited: omero_web (exit status 96; not expected)
omero-server | ln: failed to create symbolic link 'lib/scripts/custom_scripts/omero_scripts': File exists
omero-web | 2017-10-10 13:20:08,329 INFO spawned: 'omero_web' with pid 42
omero-web | 2017-10-10 13:20:10,082 INFO success: omero_web entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web | 2017-10-10 13:20:10,849 INFO exited: omero_web (exit status 0; expected)
omero-web | 2017-10-10 13:20:10,888 INFO reaped unknown pid 64
omero-web | 2017-10-10 13:20:10,888 INFO reaped unknown pid 65
omero-server | No descriptor given. Using etc/grid/default.xml
omero-db | LOG: unexpected EOF on client connection with an open transaction
The first natural question is whether I should be worried that a symbolic link failed to be made (9th to last line), and that an unexpected end-of-file was logged on the last line. If we ignore that problem and open up a browser to localhost, I am unable to login via root and password. I entered dockers env to see if I could log in manually but got this:
Do you have an equivalent settings.env file in docker as the OME Ubuntu setup. I do not know what the username and password are and am unable to login.
I proceeded to run a diagnostic check bin/omero admin diagnostics and maybe this is my issue:
As I am new to docker, I cannot say I know where python is installed within the environment. Should I simply pip install Django from within docker to fix the problem?
To login via omero where is the settings.env file. What is the password?
I have a two part question. First, this is what my terminal reads when I launch docker.
The first natural question is whether I should be worried that a symbolic link failed to be made (9th to last line), and that an unexpected end-of-file was logged on the last line. If we ignore that problem and open up a browser to localhost, I am unable to login via
root
andpassword
. I entered dockers env to see if I could log in manually but got this:Do you have an equivalent
settings.env
file in docker as the OME Ubuntu setup. I do not know what the username and password are and am unable to login.I proceeded to run a diagnostic check
bin/omero admin diagnostics
and maybe this is my issue:Recapping my 2 part question:
pip install Django
from within docker to fix the problem?omero
where is thesettings.env
file. What is the password?