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hadim / docker-omero

Set of Dockerfile to build a ready-to-use OMERO server
MIT License
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mkdir Permission denied #11

Closed maxgittelman closed 6 years ago

maxgittelman commented 6 years ago

Running a fresh install. All seems to go well until I get a permission denied from omero-server

omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | UPDATE 1
omero-server    | COMMIT
omero-server    | mkdir: cannot create directory '/data/omero_scripts/': Permission denied
omero-server    | Creating directory /omero/OMERO.server/var
omero-server    | Traceback (most recent call last):
omero-server    |   File "./bin/omero", line 125, in <module>
omero-server    |     rv = omero.cli.argv()
omero-server    |   File "/omero/OMERO.server/lib/python/omero/cli.py", line 1438, in argv
omero-server    |     cli.invoke(args[1:])
omero-server    |   File "/omero/OMERO.server/lib/python/omero/cli.py", line 952, in invoke
omero-server    |     stop = self.onecmd(line, previous_args)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/cli.py", line 1029, in onecmd
omero-server    |     self.execute(line, previous_args)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/cli.py", line 1111, in execute
omero-server    |     args.func(args)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/plugins/prefs.py", line 73, in open_and_close_config
omero-server    |     return func(*args, **kwargs)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/plugins/admin.py", line 765, in start
omero-server    |     self.startasync(args, config)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/plugins/prefs.py", line 73, in open_and_close_config
omero-server    |     return func(*args, **kwargs)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/plugins/admin.py", line 715, in startasync
omero-server    |     self.check_access(config=config)
omero-server    |   File "/omero/OMERO.server/lib/python/omero/plugins/admin.py", line 1546, in check_access
omero-server    |     os.makedirs(var)
omero-server    |   File "/usr/lib/python2.7/os.py", line 157, in makedirs
omero-server    |     mkdir(name, mode)
omero-server    | OSError: [Errno 17] File exists: '/omero/OMERO.server/var'
omero-server exited with code 1

Any ideas on what I need to change in the Dockerfile to fix this?