Open haesleinhuepf opened 1 month ago
The following error can be fixed using pip install lxml_html_clean:
pip install lxml_html_clean
--------------------------------------------------------------------------- ImportError Traceback (most recent call last) Cell In[1], line 1 ----> 1 from napari_assistant._categories import CATEGORIES 3 try: 4 import pyclesperanto as cle File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\__init__.py:1](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/__init__.py#line=0) ----> 1 from ._gui import Assistant 2 from .__main__ import main 3 from ._viewer import Viewer File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\_gui\__init__.py:1](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/_gui/__init__.py#line=0) ----> 1 from ._Assistant import Assistant File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\_gui\_Assistant.py:9](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/_gui/_Assistant.py#line=8) 7 from qtpy.QtGui import QCursor 8 from typing import Union ----> 9 from .._categories import CATEGORIES, Category, filter_categories, find_function, get_category_of_function 10 from ._button_grid import ButtonGrid, _get_highlight_brush, _get_background_brush 11 from ._category_widget import make_gui_for_category File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\_categories.py:6](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/_categories.py#line=5) 4 import numpy as np 5 import napari ----> 6 from napari.layers import Image, Labels, Layer 7 from typing_extensions import Annotated 8 import inspect File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\layers\__init__.py:9](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/layers/__init__.py#line=8) 1 """Layers are the viewable objects that can be added to a viewer. 2 3 Custom layers must inherit from Layer and pass along the 4 `visual node <https://vispy.org/api/vispy.scene.visuals.html>`_ 5 to the super constructor. 6 """ 7 import inspect as _inspect ----> 9 from napari.layers.base import Layer 10 from napari.layers.image import Image 11 from napari.layers.labels import Labels File ~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\layers\base\__init__.py:1 ----> 1 from napari.layers.base._base_constants import ActionType 2 from napari.layers.base.base import Layer, no_op 4 __all__ = ['Layer', 'no_op', 'ActionType'] File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\layers\base\_base_constants.py:4](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/layers/base/_base_constants.py#line=3) 1 from collections import OrderedDict 2 from enum import IntEnum, auto ----> 4 from napari.utils.misc import StringEnum 5 from napari.utils.translations import trans 8 class Blending(StringEnum): File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\utils\__init__.py:8](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/utils/__init__.py#line=7) 2 from napari.utils.colormaps.colormap import ( 3 Colormap, 4 CyclicLabelColormap, 5 DirectLabelColormap, 6 ) 7 from napari.utils.info import citation_text, sys_info ----> 8 from napari.utils.notebook_display import nbscreenshot 9 from napari.utils.progress import cancelable_progress, progrange, progress 11 __all__ = ( 12 'Colormap', 13 'DirectLabelColormap', (...) 21 'sys_info', 22 ) File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\utils\notebook_display.py:9](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/utils/notebook_display.py#line=8) 7 from lxml.etree import ParserError 8 from lxml.html import document_fromstring ----> 9 from lxml.html.clean import Cleaner 11 lxml_unavailable = False 12 except ModuleNotFoundError: File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\lxml\html\clean.py:18](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/lxml/html/clean.py#line=17) 8 __all__ = [ 9 "clean_html", 10 "clean", (...) 15 "word_break_html", 16 ] 17 except ImportError: ---> 18 raise ImportError( 19 "lxml.html.clean module is now a separate project lxml_html_clean[.\n](http://localhost:8888/lab/workspaces/auto-B/tree/docs/n)" 20 "Install lxml[html_clean] or lxml_html_clean directly." 21 ) from None ImportError: lxml.html.clean module is now a separate project lxml_html_clean. Install lxml[html_clean] or lxml_html_clean directly.
The following error can be fixed using
pip install lxml_html_clean
: