haesleinhuepf / git-bob-bioimage-analysis-example

BSD 3-Clause "New" or "Revised" License
2 stars 0 forks source link

Added a Jupyter notebook for cell segmentation using the watershed algorithm in the "notebooks" directory. #13

Closed github-actions[bot] closed 1 day ago

github-actions[bot] commented 1 day ago

This message was generated by git-bob (version: 0.3.1, model: gpt-4o-2024-08-06), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.

I added a Jupyter notebook in the "notebooks" directory to implement a cell segmentation workflow using the watershed algorithm. The notebook includes detailed step-by-step instructions and visualizations to guide users through loading an image, computing gradients, generating markers, applying the watershed algorithm, and measuring cell areas. Additionally, the image file "membranes.png" was downloaded and saved in the "data" directory for use in the notebook.

closes #12