haesleinhuepf / git-bob-bioimage-analysis-example

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Cell segmentation using enhanced watershed and background subtraction in a Jupyter notebook. #19

Closed github-actions[bot] closed 1 day ago

github-actions[bot] commented 1 day ago

This message was generated by git-bob (version: 0.3.2, model: gpt-4o-2024-08-06), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.

Implemented a Jupyter notebook for cell segmentation, which includes steps for loading and processing the image "membranes.png" with enhanced marker detection and background subtraction techniques. The code uses the watershed algorithm for cell segmentation with local gradient computation, followed by object cleaning and property measurement to determine the area of each segmented cell.

closes #12

haesleinhuepf commented 1 day ago

Please execute the notebook segmentation_analysis.ipynb

git-bob implement this

haesleinhuepf commented 1 day ago

Please execute the notebook segmentation_analysis.ipynb

git-bob implement this