Line numbers

[haesleinhuepf]

How could we add line numbers to the git-bob-manuscript.tex to make it easier to navigate and comments for reviewers?

git-bob think about this

[github-actions[bot]]

^{This message was generated by git-bob (version: 0.9.0, model: gpt-4o-2024-08-06, log), an experimental AI-based assistant. It can make mistakes and has limitations. Check its messages carefully.}

To add line numbers to the git-bob-manuscript.tex file for easier navigation and review, you can use the lineno package. Here is how you can modify the LaTeX document to include line numbers:

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Manuscript file by Robert Haase, license CC-BY 4.0
%%%
%%% https://github.com/haesleinhuepf/git-bob-manuscript
%%% https://creativecommons.org/licenses/by/4.0/deed.en 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% LaTeX Template for ECAI Papers 
%%% Prepared by Ulle Endriss (version 1.0 of 2023-12-10)

%%% To be used with the ECAI class file ecai.cls.
%%% You also will need a bibliography file (such as mybibfile.bib).

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Start your document with the \documentclass{} command.
%%% Use the first variant for the camera-ready paper.
%%% Use the second variant for submission (for double-blind reviewing).

\documentclass{ecai} 
%\documentclass[doubleblind]{ecai} 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Load any packages you require here. 

\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{amsmath}
\usepackage{amsthm}
\usepackage{booktabs}
\usepackage{enumitem}
\usepackage{graphicx}
\usepackage{color}
\usepackage{hyperref}
\usepackage{lineno} % Add this line to use the lineno package

\usepackage{adjustbox}
\usepackage{array}
\usepackage{booktabs}
\usepackage{multirow}

\newcolumntype{R}[2]{%
    >{\adjustbox{angle=#1,lap=\width-(#2)}\bgroup}%
    l%
    <{\egroup}%
}
\newcommand*\rot{\multicolumn{1}{R{90}{1em}}}% no optional argument here, please!

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Define any theorem-like environments you require here.

\newtheorem{theorem}{Theorem}
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{corollary}[theorem]{Corollary}
\newtheorem{proposition}[theorem]{Proposition}
\newtheorem{fact}[theorem]{Fact}
\newtheorem{definition}{Definition}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Define any new commands you require here.

\newcommand{\BibTeX}{B\kern-.05em{\sc i\kern-.025em b}\kern-.08em\TeX}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{document}

\linenumbers % Add this line to start line numbering

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{frontmatter}

%%% Use this command to specify your submission number.
%%% In doubleblind mode, it will be printed on the first page.

\paperid{363} 

%%% Use this command to specify the title of your paper.

\title{Towards Transparency and Knowledge Exchange in AI-assisted Data Analysis Code Generation}

%%% Use this combinations of commands to specify all authors of your 
%%% paper. Use \fnms{} and \snm{} to indicate everyone's first names 
%%% and surname. This will help the publisher with indexing the 
%%% proceedings. Please use a reasonable approximation in case your 
%%% name does not neatly split into "first names" and "surname".
%%% Specifying your ORCID digital identifier is optional. 
%%% Use the \thanks{} command to indicate one or more corresponding 
%%% authors and their email address(es). If so desired, you can specify
%%% author contributions using the \footnote{} command.

\author[A,B]{\fnms{Robert}~\snm{Haase}\orcid{0000-0001-5949-2327}\thanks{Corresponding Author. Email: robert.haase@uni-leipzig.de}}

\address[A]{Data Science Center, Leipzig University, Humboldtstra{\ss}e 25, 04105 Leipzig, Germany}
\address[B]{Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden / Leipzig}

%%% Use this environment to include an abstract of your paper.

\begin{abstract}

The integration of Large Language Models (LLMs) in scientific research presents both opportunities and challenges for life scientists. Key challenges include ensuring transparency in AI-generated content and facilitating efficient knowledge exchange among researchers. These issues arise from the opaque nature of AI-driven code generation and the informal sharing of AI insights, which may hinder reproducibility and collaboration. This paper introduces git-bob, an innovative AI-assistant designed to address these challenges by fostering an interactive and transparent collaboration platform within GitHub. By enabling seamless dialogue between humans and AI, git-bob ensures that AI contributions are transparent and verifiable. Moreover, it supports collaborative knowledge exchange, enhancing the interdisciplinary dialogue necessary for cutting-edge life sciences research. The open-source nature of git-bob further promotes accessibility and customization, positioning it as a vital tool in employing LLMs responsibly and effectively within scientific communities.

\end{abstract}

\end{frontmatter}

%%% Note: Ensure that \linenumbers is placed after \begin{document} but before the main content to enable line numbering throughout the document.

This will help you add line numbers to your .tex file throughout the document, making it easier for reviewers to navigate and comment.

[haesleinhuepf]

git-bob implement this