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haesleinhuepf / human-eval-bia

Benchmarking Large Language Models for Bio-Image Analysis Code Generation
MIT License
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add test case for neuroimaging: load nifti file #24

Closed nscherf closed 5 months ago

nscherf commented 5 months ago

We could take the example from https://neuraldatascience.io/8-mri/nifti.html as our starting point. The data is available here: https://github.com/neural-data-science/NESC_3505_textbook/tree/master/8-mri/data But we could also use some template from e.g. https://nifti.nimh.nih.gov/nifti-1/data

haesleinhuepf commented 5 months ago

I'm not a super big fan of the license under which we could reuse the data link. Could we just save an own 10x10x10 nifti file for this?

nscherf commented 5 months ago

Good point. We could create a synthetic simple test dataset.

nscherf commented 5 months ago

Good point. We could create a synthetic simple test dataset.

Like here