Add fit_circle test - Githubissues

haesleinhuepf / human-eval-bia

Benchmarking Large Language Models for Bio-Image Analysis Code Generation

MIT License

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Add fit_circle test #38

Closed tischi closed 2 months ago

tischi commented 2 months ago

This PR contains:

[X] a new test-case for the benchmark
- [X] I hereby confirm that NO LLM-based technology (such as github copilot) was used while writing this benchmark
[ ] new generator-functions allowing to sample from other LLMs
[ ] new samples (sample_....jsonl files)
[ ] new benchmarking results (..._results.jsonl files)
[ ] documentation update
[ ] bug fixes

Related github issue (if relevant): closes #35

Short description:

Adds a test for fitting a circle to a list of points

How do you think will this influence the benchmark results?

Not sure, could be of medium difficulty

Why do you think it makes sense to merge this PR?

Circle fitting is relevant in various circumstances in bioimage analysis, e.g. determining the boundaries of a multi-well plate well or determining the radius of the NPC in single molecule data

Notes:

I added the circle-fit library as the reference implementation; it installed very fast so I think it should be fine.