test cases suggestions - Githubissues

haesleinhuepf / human-eval-bia

Benchmarking Large Language Models for Bio-Image Analysis Code Generation

MIT License

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test cases suggestions #99

Open pr4deepr opened 2 weeks ago

pr4deepr commented 2 weeks ago

Hi @haesleinhuepf In terms of test cases:

opening ome tiff files
computing histogram of image intensities
fft or fourier transform
operations involving processing shapely polygons
- converting coordinates to Points
- list of points to polygons

Are these of interest?

Cheers Pradeep

pr4deepr commented 2 weeks ago

Another one could be composing affine transformations.

haesleinhuepf commented 2 weeks ago

Awesome, thanks for the input!

FFT is on the way: #94
OME Tiffs are already there (to some degree): https://github.com/haesleinhuepf/human-eval-bia/blob/main/test_cases/open_image_read_voxel_size.ipynb

The others are great ideas too! Feel free to send a PR! :-)

And one hint: When implementing polygon, points and also affine-transforms: Make sure to build in some tolerance in the assert-statements so that multiple implementations (with slightly different results) can pass the tests.