Open haesleinhuepf opened 3 years ago
When using manual split on a layer that was created using clEsperanto, this error pops up:
--------------------------------------------------------------------------- AttributeError Traceback (most recent call last) c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\widgets\_bases\value_widget.py in _on_value_change(self=PushButton(value=False, annotation=None, name='call_button'), *args=(False,)) 53 def _on_value_change(self, *args): 54 """Called when the widget value changes. args come from the widget itself.""" ---> 55 self.changed(value=args[0] if args else None) self.changed = <magicgui.events.EventEmitter object at 0x0000024AE34A2C70> global value = undefined args = (False,) 56 57 def get_value(self): c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\events.py in __call__(self=<magicgui.events.EventEmitter object>, *args=(), **kwargs={'value': False}) 651 continue 652 --> 653 self._invoke_callback(cb, event) self._invoke_callback = <bound method EventEmitter._invoke_callback of <magicgui.events.EventEmitter object at 0x0000024AE34A2C70>> cb = <function FunctionGui.__init__.<locals>._disable_button_and_call at 0x0000024AE34A49D0> event = <Event blocked=False handled=False native=None source=None sources=[] type=changed> 654 if event.blocked: 655 break c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\events.py in _invoke_callback(self=<magicgui.events.EventEmitter object>, cb=<function FunctionGui.__init__.<locals>._disable_button_and_call>, event=<Event blocked=False handled=False native=None source=None sources=[] type=changed>) 672 cb(event) 673 except Exception: --> 674 _handle_exception( global _handle_exception = <function _handle_exception at 0x0000024AB07EE280> self.ignore_callback_errors = False self.print_callback_errors = 'reminders' self = <magicgui.events.EventEmitter object at 0x0000024AE34A2C70> global cb_event = undefined cb = <function FunctionGui.__init__.<locals>._disable_button_and_call at 0x0000024AE34A49D0> event = <Event blocked=False handled=False native=None source=None sources=[] type=changed> 675 self.ignore_callback_errors, 676 self.print_callback_errors, c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\events.py in _handle_exception(ignore_callback_errors=False, print_callback_errors='reminders', obj=<magicgui.events.EventEmitter object>, cb_event=(<function FunctionGui.__init__.<locals>._disable_button_and_call>, <Event blocked=False handled=False native=None source=None sources=[] type=changed>), node=None) 139 # Handle 140 if value and not ignore_callback_errors: --> 141 raise value value = AttributeError("'OCLArray' object has no attribute 'item'") 142 if print_callback_errors != "never": 143 this_print: Optional[str] = "full" c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\events.py in _invoke_callback(self=<magicgui.events.EventEmitter object>, cb=<function FunctionGui.__init__.<locals>._disable_button_and_call>, event=<Event blocked=False handled=False native=None source=None sources=[] type=changed>) 670 def _invoke_callback(self, cb: Callback, event: Event): 671 try: --> 672 cb(event) cb = <function FunctionGui.__init__.<locals>._disable_button_and_call at 0x0000024AE34A49D0> event = <Event blocked=False handled=False native=None source=None sources=[] type=changed> 673 except Exception: 674 _handle_exception( c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\widgets\_function_gui.py in _disable_button_and_call(val=<Event blocked=False handled=False native=None source=None sources=[] type=changed>) 185 self._call_button.enabled = False 186 try: --> 187 self.__call__() global self.__call__ = undefined 188 finally: 189 self._call_button.enabled = True c:\users\rober\miniconda3\envs\bio1\lib\site-packages\magicgui\widgets\_function_gui.py in __call__(self=<FunctionGui Manually_split_labels(labels_layer:...iewer.QtViewer object at 0x0000024AB1066040>>}))>, *args=(), **kwargs={}) 283 self._tqdm_depth = 0 # reset the tqdm stack count 284 with _function_name_pointing_to_widget(self): --> 285 value = self._function(*bound.args, **bound.kwargs) value = undefined self._function = <function Manually_split_labels at 0x0000024ADB4AB5E0> bound.args = (<Labels layer 'Result of voronoi_otsu_labeling' at 0x24ae32b5f10>, <Points layer 'Points' at 0x24ae34a2d60>, Viewer(axes=Axes(visible=False, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 126.5, 127.5), zoom=1.5615199157178166, angles=(0.0, 0.0, 90.0), perspective=0.0, interactive=True), cursor=Cursor(position=(138.98783981467867, 334.66996402314743), scaled=True, size=1, style='pointing'), dims=Dims(ndim=2, ndisplay=2, last_used=1, range=((0.0, 253.0, 1.0), (0.0, 255.0, 1.0)), current_step=(0, 0), order=(0, 1), axis_labels=('0', '1')), grid=GridCanvas(enabled=False, stride=1, shape=(-1, -1)), layers=[<Image layer 'blobs' at 0x24adb63d9d0>, <Labels layer 'Result of voronoi_otsu_labeling' at 0x24ae32b5f10>, <Points layer 'Points' at 0x24ae34a2d60>], scale_bar=ScaleBar(visible=False, colored=False, ticks=True, position='bottom_right', font_size=10.0, unit=None), text_overlay=TextOverlay(visible=False, color=array([1., 1., 1., 1.]), font_size=10.0, position='top_left', text=''), help='hold <space> to pan/zoom', status='Points [139 335]', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x0000024AB07A55E0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'Control-Shift-C': <bound method QtViewer.toggle_console_visibility of <napari._qt.qt_viewer.QtViewer object at 0x0000024AB1066040>>})) bound.kwargs = {} 286 287 self._call_count += 1 c:\structure\code\napari-manual-split-and-merge-labels\napari_manual_split_and_merge_labels\_function.py in Manually_split_labels(labels_layer=<Labels layer 'Result of voronoi_otsu_labeling'>, points_layer=<Points layer 'Points'>, viewer=Viewer(axes=Axes(visible=False, labels=True, col..._viewer.QtViewer object at 0x0000024AB1066040>>})) 43 points = points_layer.data 44 ---> 45 label_ids = [labels.item(tuple([int(j) for j in i])) for i in points] label_ids = undefined global labels.item = undefined global tuple = undefined global int = undefined global j = undefined i = undefined points = array([[143.47065183, 90.03650819], [151.15547243, 97.72132879]]) 46 47 # make a binary image first c:\structure\code\napari-manual-split-and-merge-labels\napari_manual_split_and_merge_labels\_function.py in <listcomp>(.0=<iterator object>) 43 points = points_layer.data 44 ---> 45 label_ids = [labels.item(tuple([int(j) for j in i])) for i in points] global label_ids = undefined global labels.item = undefined global tuple = undefined global int = undefined global j = undefined i = array([143.47065183, 90.03650819]) global points = undefined 46 47 # make a binary image first AttributeError: 'OCLArray' object has no attribute 'item'
When using manual split on a layer that was created using clEsperanto, this error pops up: