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hagberg / planarity

Planar graph algorithms
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Planarity Build Fails under VirtualEnv on OSX 10.7 #2

Closed gregglind closed 10 years ago

gregglind commented 10 years ago
  1. Awesome job on this library generally!
  2. here is initial failure log.
  3. I will continue to debug. 

$ pip install planarity
Downloading/unpacking planarity
  Downloading planarity-0.3.1.tar.gz (212kB): 212kB downloaded
  Running setup.py (path:/Users/glind/venvs/py27/build/planarity/setup.py) egg_info for package planarity

    warning: no files found matching '*.gz' under directory 'examples'
    warning: no files found matching '*.h' under directory 'examples'
    warning: no files found matching '*.html' under directory 'doc'
    warning: no previously-included files matching '*~' found anywhere in distribution
    warning: no previously-included files matching '*.pyc' found anywhere in distribution
    warning: no previously-included files matching '.git' found anywhere in distribution
    no previously-included directories found matching 'doc/build'
Requirement already satisfied (use --upgrade to upgrade): setuptools in /Users/glind/venvs/py27/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg (from planarity)
Installing collected packages: planarity
  Running setup.py install for planarity
    skipping 'planarity/planarity.c' Cython extension (up-to-date)
    building 'planarity.planarity' extension
    /usr/bin/llvm-gcc -fno-strict-aliasing -fno-common -dynamic -O3 -w -pipe -march=core2 -msse4 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Iplanarity/src/ -I/usr/local/Cellar/python/2.7.2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c planarity/planarity.c -o build/temp.macosx-10.4-x86_64-2.7/planarity/planarity.o
    /usr/bin/llvm-gcc -fno-strict-aliasing -fno-common -dynamic -O3 -w -pipe -march=core2 -msse4 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Iplanarity/src/ -I/usr/local/Cellar/python/2.7.2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c planarity/src/graphColorVertices.c -o build/temp.macosx-10.4-x86_64-2.7/planarity/src/graphColorVertices.o
    planarity/src/graphColorVertices.c:53:20: error: malloc.h: No such file or directory
    error: command '/usr/bin/llvm-gcc' failed with exit status 1
    Complete output from command /Users/glind/venvs/py27/Python.app/Contents/MacOS/Python -c "import setuptools, tokenize;__file__='/Users/glind/venvs/py27/build/planarity/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/0z/4g3t_26s3gv835xswsslbn400000gp/T/pip-2Y3itf-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/glind/venvs/py27/Python.app/Contents/MacOS/../../../include/site/python2.7:
    running install

running build

running build_py

creating build

creating build/lib.macosx-10.4-x86_64-2.7

creating build/lib.macosx-10.4-x86_64-2.7/planarity

copying planarity/__init__.py -> build/lib.macosx-10.4-x86_64-2.7/planarity

copying planarity/planarity_functions.py -> build/lib.macosx-10.4-x86_64-2.7/planarity

copying planarity/planarity_networkx.py -> build/lib.macosx-10.4-x86_64-2.7/planarity

creating build/lib.macosx-10.4-x86_64-2.7/planarity/tests

copying planarity/tests/__init__.py -> build/lib.macosx-10.4-x86_64-2.7/planarity/tests

copying planarity/tests/test.py -> build/lib.macosx-10.4-x86_64-2.7/planarity/tests

copying planarity/tests/test_planarity.py -> build/lib.macosx-10.4-x86_64-2.7/planarity/tests

copying planarity/tests/test_planarity_networkx.py -> build/lib.macosx-10.4-x86_64-2.7/planarity/tests

running build_ext

skipping 'planarity/planarity.c' Cython extension (up-to-date)

building 'planarity.planarity' extension

creating build/temp.macosx-10.4-x86_64-2.7

creating build/temp.macosx-10.4-x86_64-2.7/planarity

creating build/temp.macosx-10.4-x86_64-2.7/planarity/src

/usr/bin/llvm-gcc -fno-strict-aliasing -fno-common -dynamic -O3 -w -pipe -march=core2 -msse4 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Iplanarity/src/ -I/usr/local/Cellar/python/2.7.2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c planarity/planarity.c -o build/temp.macosx-10.4-x86_64-2.7/planarity/planarity.o

/usr/bin/llvm-gcc -fno-strict-aliasing -fno-common -dynamic -O3 -w -pipe -march=core2 -msse4 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Iplanarity/src/ -I/usr/local/Cellar/python/2.7.2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c planarity/src/graphColorVertices.c -o build/temp.macosx-10.4-x86_64-2.7/planarity/src/graphColorVertices.o

planarity/src/graphColorVertices.c:53:20: error: malloc.h: No such file or directory

error: command '/usr/bin/llvm-gcc' failed with exit status 1

----------------------------------------
Cleaning up...
Command /Users/glind/venvs/py27/Python.app/Contents/MacOS/Python -c "import setuptools, tokenize;__file__='/Users/glind/venvs/py27/build/planarity/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/0z/4g3t_26s3gv835xswsslbn400000gp/T/pip-2Y3itf-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/glind/venvs/py27/Python.app/Contents/MacOS/../../../include/site/python2.7 failed with error code 1 in /Users/glind/venvs/py27/build/planarity
Storing debug log for failure in /Users/glind/.pip/pip.log
gregglind commented 10 years ago

sorry dup!