hagenaue / BrainInABlender

An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA;  2Genet., Univ. of Michigan, Ann Arbor, MI, USA;  3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA 
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Update README.md #2

Closed apanko closed 7 years ago

apanko commented 7 years ago

Hey Megan here's an edit with more info. Do you want me to add the full citations from your website?

hagenaue commented 7 years ago

Yes, let's add the citations.

For dependencies:

I believe all of this should be found if you look at the "help" information for Sir_UnMixALot within RStudio.

If I remember correctly, I think it is possible to add sample input and sample output to a github ReadMe. (e.g. the first couple of rows/columns)

On Mon, Nov 21, 2016 at 3:33 PM, apanko notifications@github.com wrote:

Hey Megan here's an edit with more info. Do you want me to add the full

citations from your website?

You can view, comment on, or merge this pull request online at:

https://github.com/hagenaue/BrainInABlender/pull/2 Commit Summary

  • Update README.md

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Megan Hastings Hagenauer, Ph.D.

Research Investigator in the Molecular, Behavioral Neuroscience Institute Instructor in the Department of Psychology University of Michigan-Ann Arbor