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hagenaue / BrainInABlender

An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA; 2Genet., Univ. of Michigan, Ann Arbor, MI, USA; 3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA

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Add missing dependency #8

Closed eturkes closed 5 years ago

eturkes commented 5 years ago

Installs plyr if not already installed. Otherwise the package fails to install.

hagenaue commented 5 years ago

Thank you! Let me know if there is anything that you need while using the package - it is definitely a little klunky. I've recently been doing other work offline to incorporate cell types from other subcortical regions. I should upload the code/databases sometime soon (hopefully!).

eturkes commented 5 years ago

Sure thing! And looking forward to the updates