Open hagenaue opened 4 years ago
A) Review the code associated with the subset of animals included in the proteoglycan in situ hybridization experiments (single code document): https://github.com/hagenaue/Angela_HRLR_StressEnrichData/blob/master/21_OnlyProteoglycanAnimals.R
B) The updated dataset is located here: https://github.com/hagenaue/Angela_HRLR_StressEnrichData/blob/master/HRLR_EE_Stress_AllBehavData_forR_withNewCORTOxytIL6_SI_OFSDScoresFixed_FixedFormatIDs_TimeOnTop_forProteoglycan.csv
C) Re-run the parts of the code related to the open field (distance, time in center) or that include any processing of the full dataset.
A) Review the code (almost this entire repository...sigh) and identify which sections include the open field task (Distance and %time in center) or USV measurements in some manner and will need to be re-run.
B) The updated dataset is located here: https://github.com/hagenaue/Angela_HRLR_StressEnrichData/blob/master/HRLR_EE_Stress_AllBehavData_forR_withNewCORTOxytIL6_SI_OFSDScoresFixed_FixedFormatIDs_TimeOnTop_forFullBehavior.csv
C) Re-run the parts of the code related to the open field (distance, time in center) or USVs or that include any processing of the full dataset. This is going to be a much bigger pain in the butt than re-running the code for the proteoglycan animals, because we should probably adapt the code to include some output for 1) the full open field time series, 2) different variations on the USV analyses, to provide justification for the final analyses. Meh.
Dataset just for proteoglycan ISH animals: https://github.com/hagenaue/Angela_HRLR_StressEnrichData/blob/master/HRLR_EE_Stress_AllBehavData_forR_withNewCORTOxytIL6_SI_OFSDScoresFixed_FixedFormatIDs_TimeOnTop_forProteoglycan2.csv
... it doesn't change any of the results, but it will change the y-axis on the graphs... which means re-outputting everything again. :(
1) Review where we left off for the analyses of...
A) The full behavioral and hormonal dataset: https://umich.box.com/s/ejwub6sexjcxy8c43pw56nbpjq00k64z
B) The subset of animals included in the proteoglycan in situ hybridization experiments. https://umich.box.com/s/5olt9fgbpt3eu1rtc2ra97v2lbgofyf0
Highlight any methods & results related to the open field task (Distance and %time in center) or USV measurements ( or all variables together including these)